Numerical simulations of elastic capsules with nucleus in shear flow

Authors

  • Arash Alizad Banaei KTH Mechanics, Linné FLOW Centre and SeRC (Swedish e-science Research Centre), Stockholm, Sweden
  • Jean- Christophe Loiseau KTH Mechanics, Linné FLOW Centre and SeRC (Swedish e-science Research Centre), Stockholm, Sweden
  • Iman Lashgari KTH Mechanics, Linné FLOW Centre and SeRC (Swedish e-science Research Centre), Stockholm, Sweden http://orcid.org/0000-0002-0122-401X
  • Luca Brandt KTH Mechanics, Linné FLOW Centre and SeRC (Swedish e-science Research Centre), Stockholm, Sweden http://orcid.org/0000-0002-4346-4732

Keywords:

Capsule, nucleus, shear flow, immersed boundary method

Abstract

The shear-induced deformation of a capsule with a stiff nucleus, a model of eukaryotic cells, is studied numerically. The membrane of the cell and of its nucleus are modelled as a thin elastic material obeying a Neo-Hookean constitutive law. The fluid–structure coupling is obtained using an immersed boundary method. The variations induced by the presence of the nucleus on the cell deformation are investigated when varying the viscosity ratio between the inner and outer fluids, the membrane elasticity and its bending stiffness. The deformation of the eukaryotic cell is smaller than that of the prokaryotic one. The reduction in deformation increases for larger values of the capillary number. The eukaryotic cell remains thicker in itsmiddle part compared to the prokaryotic one, thus making it less flexible to pass through narrow capillaries. For a viscosity ratio of 5, the deformation of the cell is smaller than in the case of uniform viscosity. In addition, for non-zero bending stiffness of the membrane, the deformation decreases and the shape is closer to an ellipsoid. Finally, we compare the results obtained modelling the nucleus as an inner stiffer membrane with those obtained using a rigid particle.

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References

Adams, J. C., & Swarztrauber, P. N. (1999). Spherepack 3.0: A model development facility.

Monthly Weather Review, 127, 1872–1878.

Ardekani, M. N., Costa, P., Breugem, W.-P., & Brandt, L. (2016). Numerical study of the

sedimentation of spheroidal particles. arXiv preprint arXiv:1602.05769.

Bannister, L., & Mitchell, G. (2003). The ins, outs and roundabouts of malaria. Trends in

Parasitology, 19, 209–213.

Chang, K.-S., & Olbricht, W. L. (1993). Experimental studies of the deformation and breakup

of a synthetic capsule in steady and unsteady simple shear flow. Journal of Fluid Mechanics,

, 609–633.

Breugem, W.-P. (2012). A second-order accurate immersed boundary method for fully

resolved simulations of particle-laden flows. Journal of Computational Physics, 231, 4469–

Caille, N., Tardy, Y., & Meister, J.-J. (1998). Assessment of strain field in endothelial cells

subjected to uniaxial deformation of their substrate. Annals of Biomedical Engineering, 26,

–416.

Caille, N., Thoumine, O., Tardy, Y., &Meister, J.-J. (2002). Contribution of the nucleus to the

mechanical properties of endothelial cells. Journal of Biomechanics, 35, 177–187.

Chorin, A. J. (1968). Numerical solution of the Navier–Stokes equations. Mathematics of

Computation, 22, 745–762.

Cooke, B. M., Mohandas, N., & Coppel, R. L. (2001). The malaria-infected red blood cell:

Structural and functional changes. Advances in Parasitology, 50, 1–86.

Dodd, M. S., & Ferrante, A. (2014). A fast pressure-correction method for incompressible

two-fluid flows. Journal of Computational Physics, 273, 416–434.

Fischer, T. (1977). Tank tread motion of red-cell membranes in viscometric flow-behavior of

intracellular and extracellular markers (with film). Blood Cells, 3, 351–365.

Fischer, T. M., Stohr-Lissen, M., & Schmid-Schonbein, H. (1978). The red cell as a fluid

droplet: Tank tread-like motion of the human erythrocyte membrane in shear flow. Science,

, 894–896.

Freund, J. B. (2007). Leukocyte margination in a model microvessel. Physics of Fluids (1994-

present), 19, 023301.

Freund, J.B.,&Zhao,H. (2010).Ahigh-resolution fast boundary-integralmethod for multiple

interacting blood cells. Computational Hydrodynamics of Capsules and Biological Cells, 1,

Gaehtgens, P., Dührssen, C., & Albrecht, K. H. (1979). Motion, deformation, and interaction

of blood cells and plasma during flow through narrow capillary tubes. Blood Cells, 6, 799–

Galbraith, C. G., Skalak, R., & Chien, S. (1998). Shear stress induces spatial reorganization of

the endothelial cell cytoskeleton. Cell Motility and the Cytoskeleton, 40, 317–330.

Gao, T., Hu, H. H., & Castañeda, P. P. (2011). Rheology of a suspension of elastic particles in

a viscous shear flow. Journal of Fluid Mechanics, 687, 209–237.

Gao, T., Hu, H. H., & Castañeda, P. P. (2013). Dynamics and rheology of elastic particles in

an extensional flow. Journal of Fluid Mechanics, 715, 573–596.

Goldsmith, H. L., & Marlow, J. (1972). Flow behaviour of erythrocytes. I. rotation and

deformation in dilute suspensions. Proceedings of the Royal Society of London B: Biological

Sciences, 182, 351–384.

Guilak, F. (1995). Compression-induced changes in the shape and volume of the chondrocyte

nucleus. Journal of Biomechanics, 28, 1529–1541.

Guilak, F., & Mow, V. C. (2000). The mechanical environment of the chondrocyte: A

biphasic finite element model of cell-matrix interactions in articular cartilage. Journal of

Biomechanics, 33, 1663–1673.

Guo, Q., Duffy, S. P., Matthews, K., Deng, X., Santoso, A. T., Islamzada, E., & Ma, H. (2016).

Deformability based sorting of red blood cells improves diagnostic sensitivity for malaria

caused by plasmodium falciparum. Lab on a Chip, 16, 645–654.

Huang, W.-X., Chang, C. B., & Sung, H. J. (2012). Three-dimensional simulation of elastic

capsules in shear flow by the penalty immersed boundary method. Journal of Computational

Physics, 231, 3340–3364.

Ingber, D. E. (1990). Fibronectin controls capillary endothelial cell growth bymodulating cell

shape. Proceedings of the National Academy of Sciences, 87, 3579–3583.

Kan, H.-C., Shyy, W., Udaykumar, H. S., Vigneron, P., & Tran-Son-Tay, R. (1999). Effects of

nucleus on leukocyte recovery. Annals of Biomedical Engineering, 27, 648–655.

Kessler, S., Finken, R., & Seifert, U. (2008). Swinging and tumbling of elastic capsules in shear

flow. Journal of Fluid Mechanics, 605, 207–226.

Kilimnik, A., Mao, W., & Alexeev, A. (2011). Inertial migration of deformable capsules in

channel flow. Physics of Fluids (1994-present), 23, 123302.

Kim, B., Chang, C. B., Park, S. G., & Sung, H. J. (2015). Inertial migration of a 3d elastic

capsule in a plane poiseuille flow. International Journal of Heat and Fluid Flow, 54, 87–96.

Krüger, T., Kaoui,B.,&Harting, J. (2014). Interplay of inertia and deformability on rheological

properties of a suspension of capsules. Journal of Fluid Mechanics, 751, 725–745.

Lac, E. & Barthès-Biesel, D. (2005). Deformation of a capsule in simple shear flow: Effect of

membrane prestress. Physics of Fluids (1994-present), 17, 072105.

Lashgari, I., Picano, F., Breugem, W.-P., & Brandt, L. (2014). Laminar, turbulent, and inertial

shear-thickening regimes in channel flow of neutrally buoyant particle suspensions. Physical

Review Letters, 113, 254502.

Lashgari, I., Picano, F., Breugem, W. P., & Brandt, L. (2016). Channel flow of rigid sphere

suspensions: Particle dynamics in the inertial regime. International Journal of Multiphase

Flow, 78, 12–24.

Li, N., & Laizet, S. (2010). 2decomp & fft-a highly scalable 2d decomposition library and fft

interface. Cray User Group 2010 Conference, Edinburgh, 1–13.

Lim, C. T., Zhou, E. H., & Quek, S. T. (2006). Mechanical models for living cells – A review.

Journal of Biomechanics, 39, 195–216.

Li, X., & Sarkar, K. (2008). Front tracking simulation of deformation and buckling instability

of a liquid capsule enclosed by an elasticmembrane. Journal of Computational Physics, 227,

–5018.

Maniotis, A. J.,Chen, C. S., & Ingber,D.E. (1997). Demonstration of mechanical connections

between integrins, cytoskeletal filaments, and nucleoplasm that stabilize nuclear structure.

Proceedings of the National Academy of Sciences, 94, 849–854.

Peskin, C. S. (2002). The immersed boundary method. Acta Numerica, 11, 479–517.

Pozrikidis, C. (1995). Finite deformation of liquid capsules enclosed by elastic membranes in

simple shear flow. Journal of Fluid Mechanics, 297, 123–152.

Pozrikidis, C. (2001). Effect of membrane bending stiffness on the deformation of capsules in

simple shear flow. Journal of Fluid Mechanics, 440, 269–291.

Pozrikidis, C. (2010). Computational hydrodynamics of capsules and biological cells (p. 89).

London: CRC Press.

Pranay, P., Anekal, S. G., Hernandez-Ortiz, J. P., & Graham, M. D. (2010). Pair collisions

of fluid-filled elastic capsules in shear flow: Effects of membrane properties and polymer

additives. Physics of Fluids (1994-present), 22, 123103.

Ramanujan, S., & Pozrikidis, C. (1998). Deformation of liquid capsules enclosed by elastic

membranes in simple shear flow: Large deformations and the effect of fluid viscosities.

Journal of Fluid Mechanics, 361, 117–143.

Rodriguez, M. L., McGarry, P. J., & Sniadecki, N. J. (2013). Review on cell mechanics:

Experimental and modeling approaches. Applied Mechanics Reviews, 65, 060801.

Roma, A. M., Peskin, C. S., & Berger, M. J. (1999). An adaptive version of the immersed

boundary method. Journal of Computational Physics, 153, 509–534.

Rorai, C., Touchard, A., Zhu, L., & Brandt, L. (2015). Motion of an elastic capsule in a

constricted microchannel. The European Physical Journal E, 38, 1–13.

Schmid-Schönbein, H., & Wells, R. (1969). Fluid drop-like transition of erythrocytes under

shear. Science, 165, 288–291.

Seol, Y., Hu, W.-F., Kim, Y., & Lai, M.-C. (2016). An immersed boundary method for

simulating vesicle dynamics in three dimensions. Journal of Computational Physics, 322,

–141.

Skalak, R., & Branemark, P. I. (1969). Deformation of red blood cells in capillaries. Science,

, 717–719.

Skotheim, J. M., & Secomb, T.W. (2007). Red blood cells and other nonspherical capsules

in shear flow: Oscillatory dynamics and the tank-treading-to-tumbling transition. Physical

Review Letters, 98, 078301.

Swarztrauber, P. N., & Spotz, W. F. (2000). Generalized discrete spherical harmonic

transforms. Journal of Computational Physics, 159, 213–230.

Uhlmann, M. (2005). An immersed boundary method with direct forcing for the simulation

of particulate flows. Journal of Computational Physics, 209, 448–476.

Unverdi, S.O.,&Tryggvason,G. (1992).Afront-trackingmethod for viscous, incompressible,

multi-fluid flows. Journal of Computational Physics, 100, 25–37.

Walter, A., Rehage, H., & Leonhard, H. (2001). Shear induced deformation of microcapsules:

Shape oscillations and membrane folding. Colloids and Surfaces A: Physicochemical and

Engineering Aspects, 183, 123–132.

Walter, J., Salsac, A.-V., Barthès-Biesel, D., & Tallec, P. L. (2010). Coupling of finite element

and boundary integral methods for a capsule in a stokes flow. International Journal for

Numerical Methods in Engineering, 83, 829–850.

Wu, T., & Feng, J. J. (2013). Simulation of malaria-infected red blood cells in microfluidic

channels: Passage and blockage. Biomicrofluidics, 7, 044115.

Zhang, Y., Huang, C., Kim, S., Golkaram, M., Dixon, M. W. A., Tilley, L., …Suresh, S.

(2015). Multiple stiffening effects of nanoscale knobs on human red blood cells infected

with plasmodium falciparum malaria parasite. Proceedings of the National Academy of

Sciences, 112, 6068–6073.

Zhao, H., Isfahani, A. H. G., Olson, L. N., & Freund, J. B. (2010). A spectral boundary integral

method for flowing blood cells. Journal of Computational Physics, 229, 3726–3744.

Zhu, L., & Brandt, L. (2015). The motion of a deforming capsule through a corner. Journal of

Fluid Mechanics, 770, 374–397.

Zhu, L., Rabault, J., & Brandt, L. (2015). The dynamics of a capsule in a wall-bounded

oscillating shear flow. Physics of Fluids (1994-present), 27, 374–397.

Zhu, L., Rorai, C., Mitra, D., & Brandt, L. (2014). A microfluidic device to sort capsules by

deformability: A numerical study. Soft Matter, 10, 7705–7711

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Published

2017-02-01

How to Cite

Banaei, A. A., Loiseau, J.-. C., Lashgari, I., & Brandt, L. (2017). Numerical simulations of elastic capsules with nucleus in shear flow. European Journal of Computational Mechanics, 26(1-2), 131–153. Retrieved from https://journals.riverpublishers.com/index.php/EJCM/article/view/294

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