Numerical simulations of elastic capsules with nucleus in shear flow
Keywords:
Capsule, nucleus, shear flow, immersed boundary methodAbstract
The shear-induced deformation of a capsule with a stiff nucleus, a model of eukaryotic cells, is studied numerically. The membrane of the cell and of its nucleus are modelled as a thin elastic material obeying a Neo-Hookean constitutive law. The fluid–structure coupling is obtained using an immersed boundary method. The variations induced by the presence of the nucleus on the cell deformation are investigated when varying the viscosity ratio between the inner and outer fluids, the membrane elasticity and its bending stiffness. The deformation of the eukaryotic cell is smaller than that of the prokaryotic one. The reduction in deformation increases for larger values of the capillary number. The eukaryotic cell remains thicker in itsmiddle part compared to the prokaryotic one, thus making it less flexible to pass through narrow capillaries. For a viscosity ratio of 5, the deformation of the cell is smaller than in the case of uniform viscosity. In addition, for non-zero bending stiffness of the membrane, the deformation decreases and the shape is closer to an ellipsoid. Finally, we compare the results obtained modelling the nucleus as an inner stiffer membrane with those obtained using a rigid particle.
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Adams, J. C., & Swarztrauber, P. N. (1999). Spherepack 3.0: A model development facility.
Monthly Weather Review, 127, 1872–1878.
Ardekani, M. N., Costa, P., Breugem, W.-P., & Brandt, L. (2016). Numerical study of the
sedimentation of spheroidal particles. arXiv preprint arXiv:1602.05769.
Bannister, L., & Mitchell, G. (2003). The ins, outs and roundabouts of malaria. Trends in
Parasitology, 19, 209–213.
Chang, K.-S., & Olbricht, W. L. (1993). Experimental studies of the deformation and breakup
of a synthetic capsule in steady and unsteady simple shear flow. Journal of Fluid Mechanics,
, 609–633.
Breugem, W.-P. (2012). A second-order accurate immersed boundary method for fully
resolved simulations of particle-laden flows. Journal of Computational Physics, 231, 4469–
Caille, N., Tardy, Y., & Meister, J.-J. (1998). Assessment of strain field in endothelial cells
subjected to uniaxial deformation of their substrate. Annals of Biomedical Engineering, 26,
–416.
Caille, N., Thoumine, O., Tardy, Y., &Meister, J.-J. (2002). Contribution of the nucleus to the
mechanical properties of endothelial cells. Journal of Biomechanics, 35, 177–187.
Chorin, A. J. (1968). Numerical solution of the Navier–Stokes equations. Mathematics of
Computation, 22, 745–762.
Cooke, B. M., Mohandas, N., & Coppel, R. L. (2001). The malaria-infected red blood cell:
Structural and functional changes. Advances in Parasitology, 50, 1–86.
Dodd, M. S., & Ferrante, A. (2014). A fast pressure-correction method for incompressible
two-fluid flows. Journal of Computational Physics, 273, 416–434.
Fischer, T. (1977). Tank tread motion of red-cell membranes in viscometric flow-behavior of
intracellular and extracellular markers (with film). Blood Cells, 3, 351–365.
Fischer, T. M., Stohr-Lissen, M., & Schmid-Schonbein, H. (1978). The red cell as a fluid
droplet: Tank tread-like motion of the human erythrocyte membrane in shear flow. Science,
, 894–896.
Freund, J. B. (2007). Leukocyte margination in a model microvessel. Physics of Fluids (1994-
present), 19, 023301.
Freund, J.B.,&Zhao,H. (2010).Ahigh-resolution fast boundary-integralmethod for multiple
interacting blood cells. Computational Hydrodynamics of Capsules and Biological Cells, 1,
Gaehtgens, P., Dührssen, C., & Albrecht, K. H. (1979). Motion, deformation, and interaction
of blood cells and plasma during flow through narrow capillary tubes. Blood Cells, 6, 799–
Galbraith, C. G., Skalak, R., & Chien, S. (1998). Shear stress induces spatial reorganization of
the endothelial cell cytoskeleton. Cell Motility and the Cytoskeleton, 40, 317–330.
Gao, T., Hu, H. H., & Castañeda, P. P. (2011). Rheology of a suspension of elastic particles in
a viscous shear flow. Journal of Fluid Mechanics, 687, 209–237.
Gao, T., Hu, H. H., & Castañeda, P. P. (2013). Dynamics and rheology of elastic particles in
an extensional flow. Journal of Fluid Mechanics, 715, 573–596.
Goldsmith, H. L., & Marlow, J. (1972). Flow behaviour of erythrocytes. I. rotation and
deformation in dilute suspensions. Proceedings of the Royal Society of London B: Biological
Sciences, 182, 351–384.
Guilak, F. (1995). Compression-induced changes in the shape and volume of the chondrocyte
nucleus. Journal of Biomechanics, 28, 1529–1541.
Guilak, F., & Mow, V. C. (2000). The mechanical environment of the chondrocyte: A
biphasic finite element model of cell-matrix interactions in articular cartilage. Journal of
Biomechanics, 33, 1663–1673.
Guo, Q., Duffy, S. P., Matthews, K., Deng, X., Santoso, A. T., Islamzada, E., & Ma, H. (2016).
Deformability based sorting of red blood cells improves diagnostic sensitivity for malaria
caused by plasmodium falciparum. Lab on a Chip, 16, 645–654.
Huang, W.-X., Chang, C. B., & Sung, H. J. (2012). Three-dimensional simulation of elastic
capsules in shear flow by the penalty immersed boundary method. Journal of Computational
Physics, 231, 3340–3364.
Ingber, D. E. (1990). Fibronectin controls capillary endothelial cell growth bymodulating cell
shape. Proceedings of the National Academy of Sciences, 87, 3579–3583.
Kan, H.-C., Shyy, W., Udaykumar, H. S., Vigneron, P., & Tran-Son-Tay, R. (1999). Effects of
nucleus on leukocyte recovery. Annals of Biomedical Engineering, 27, 648–655.
Kessler, S., Finken, R., & Seifert, U. (2008). Swinging and tumbling of elastic capsules in shear
flow. Journal of Fluid Mechanics, 605, 207–226.
Kilimnik, A., Mao, W., & Alexeev, A. (2011). Inertial migration of deformable capsules in
channel flow. Physics of Fluids (1994-present), 23, 123302.
Kim, B., Chang, C. B., Park, S. G., & Sung, H. J. (2015). Inertial migration of a 3d elastic
capsule in a plane poiseuille flow. International Journal of Heat and Fluid Flow, 54, 87–96.
Krüger, T., Kaoui,B.,&Harting, J. (2014). Interplay of inertia and deformability on rheological
properties of a suspension of capsules. Journal of Fluid Mechanics, 751, 725–745.
Lac, E. & Barthès-Biesel, D. (2005). Deformation of a capsule in simple shear flow: Effect of
membrane prestress. Physics of Fluids (1994-present), 17, 072105.
Lashgari, I., Picano, F., Breugem, W.-P., & Brandt, L. (2014). Laminar, turbulent, and inertial
shear-thickening regimes in channel flow of neutrally buoyant particle suspensions. Physical
Review Letters, 113, 254502.
Lashgari, I., Picano, F., Breugem, W. P., & Brandt, L. (2016). Channel flow of rigid sphere
suspensions: Particle dynamics in the inertial regime. International Journal of Multiphase
Flow, 78, 12–24.
Li, N., & Laizet, S. (2010). 2decomp & fft-a highly scalable 2d decomposition library and fft
interface. Cray User Group 2010 Conference, Edinburgh, 1–13.
Lim, C. T., Zhou, E. H., & Quek, S. T. (2006). Mechanical models for living cells – A review.
Journal of Biomechanics, 39, 195–216.
Li, X., & Sarkar, K. (2008). Front tracking simulation of deformation and buckling instability
of a liquid capsule enclosed by an elasticmembrane. Journal of Computational Physics, 227,
–5018.
Maniotis, A. J.,Chen, C. S., & Ingber,D.E. (1997). Demonstration of mechanical connections
between integrins, cytoskeletal filaments, and nucleoplasm that stabilize nuclear structure.
Proceedings of the National Academy of Sciences, 94, 849–854.
Peskin, C. S. (2002). The immersed boundary method. Acta Numerica, 11, 479–517.
Pozrikidis, C. (1995). Finite deformation of liquid capsules enclosed by elastic membranes in
simple shear flow. Journal of Fluid Mechanics, 297, 123–152.
Pozrikidis, C. (2001). Effect of membrane bending stiffness on the deformation of capsules in
simple shear flow. Journal of Fluid Mechanics, 440, 269–291.
Pozrikidis, C. (2010). Computational hydrodynamics of capsules and biological cells (p. 89).
London: CRC Press.
Pranay, P., Anekal, S. G., Hernandez-Ortiz, J. P., & Graham, M. D. (2010). Pair collisions
of fluid-filled elastic capsules in shear flow: Effects of membrane properties and polymer
additives. Physics of Fluids (1994-present), 22, 123103.
Ramanujan, S., & Pozrikidis, C. (1998). Deformation of liquid capsules enclosed by elastic
membranes in simple shear flow: Large deformations and the effect of fluid viscosities.
Journal of Fluid Mechanics, 361, 117–143.
Rodriguez, M. L., McGarry, P. J., & Sniadecki, N. J. (2013). Review on cell mechanics:
Experimental and modeling approaches. Applied Mechanics Reviews, 65, 060801.
Roma, A. M., Peskin, C. S., & Berger, M. J. (1999). An adaptive version of the immersed
boundary method. Journal of Computational Physics, 153, 509–534.
Rorai, C., Touchard, A., Zhu, L., & Brandt, L. (2015). Motion of an elastic capsule in a
constricted microchannel. The European Physical Journal E, 38, 1–13.
Schmid-Schönbein, H., & Wells, R. (1969). Fluid drop-like transition of erythrocytes under
shear. Science, 165, 288–291.
Seol, Y., Hu, W.-F., Kim, Y., & Lai, M.-C. (2016). An immersed boundary method for
simulating vesicle dynamics in three dimensions. Journal of Computational Physics, 322,
–141.
Skalak, R., & Branemark, P. I. (1969). Deformation of red blood cells in capillaries. Science,
, 717–719.
Skotheim, J. M., & Secomb, T.W. (2007). Red blood cells and other nonspherical capsules
in shear flow: Oscillatory dynamics and the tank-treading-to-tumbling transition. Physical
Review Letters, 98, 078301.
Swarztrauber, P. N., & Spotz, W. F. (2000). Generalized discrete spherical harmonic
transforms. Journal of Computational Physics, 159, 213–230.
Uhlmann, M. (2005). An immersed boundary method with direct forcing for the simulation
of particulate flows. Journal of Computational Physics, 209, 448–476.
Unverdi, S.O.,&Tryggvason,G. (1992).Afront-trackingmethod for viscous, incompressible,
multi-fluid flows. Journal of Computational Physics, 100, 25–37.
Walter, A., Rehage, H., & Leonhard, H. (2001). Shear induced deformation of microcapsules:
Shape oscillations and membrane folding. Colloids and Surfaces A: Physicochemical and
Engineering Aspects, 183, 123–132.
Walter, J., Salsac, A.-V., Barthès-Biesel, D., & Tallec, P. L. (2010). Coupling of finite element
and boundary integral methods for a capsule in a stokes flow. International Journal for
Numerical Methods in Engineering, 83, 829–850.
Wu, T., & Feng, J. J. (2013). Simulation of malaria-infected red blood cells in microfluidic
channels: Passage and blockage. Biomicrofluidics, 7, 044115.
Zhang, Y., Huang, C., Kim, S., Golkaram, M., Dixon, M. W. A., Tilley, L., …Suresh, S.
(2015). Multiple stiffening effects of nanoscale knobs on human red blood cells infected
with plasmodium falciparum malaria parasite. Proceedings of the National Academy of
Sciences, 112, 6068–6073.
Zhao, H., Isfahani, A. H. G., Olson, L. N., & Freund, J. B. (2010). A spectral boundary integral
method for flowing blood cells. Journal of Computational Physics, 229, 3726–3744.
Zhu, L., & Brandt, L. (2015). The motion of a deforming capsule through a corner. Journal of
Fluid Mechanics, 770, 374–397.
Zhu, L., Rabault, J., & Brandt, L. (2015). The dynamics of a capsule in a wall-bounded
oscillating shear flow. Physics of Fluids (1994-present), 27, 374–397.
Zhu, L., Rorai, C., Mitra, D., & Brandt, L. (2014). A microfluidic device to sort capsules by
deformability: A numerical study. Soft Matter, 10, 7705–7711